PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013424-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 236aa    MW: 25957.9 Da    PI: 7.0794
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013424-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.51.7e-36191181103
                    TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas.... 83 
                            a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++++ +++++ e+e+++ + +    
  SMil_00013424-RA_Salv  19 ATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAQLPAWHPTSAlEEERRRHQFGidlv 106
                            589**************************************************************77777444322222222222222 PP

                    TCP  84 ...nsssgkaaksaakskksqks 103
                               +           +s++++++
  SMil_00013424-RA_Salv 107 ianT-----------NSRNADAQ 118
                            2210...........11122222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-312095IPR005333Transcription factor, TCP
PROSITE profilePS5136933.2732280IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MRNIGGEIVE VEGGHIVRAT GRKDRHSKVC TAKGPRDRRV RLAAHTAIQF YDVQDRLGYD  60
RPSKAVDWLI KKAKAAIDEL AQLPAWHPTS ALEEERRRHQ FGIDLVIANT NSRNADAQNS  120
SFLPPSLDSD AIADTIKSFF PASAEASSGA MQFQSFPAPD LVSRNGGGSS SQDLRLSLQS  180
FQDPILLHHH NEQPQPQAQP QTQVLLCGTP LGLDGWPEHH QFQRLAAWNG GGDGYL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4688631e-81AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence.
GenBankFQ3818311e-81FQ381831.1 Vitis vinifera clone SS0ABG82YF20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082737.11e-113PREDICTED: transcription factor TCP4-like
RefseqXP_011082738.11e-113PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR52e-68TCP4_ARATH; Transcription factor TCP4
TrEMBLA0A0M4MCU81e-101A0A0M4MCU8_9LAMI; TCP transcription factor CIN2A
TrEMBLA0A0M5L3G71e-101A0A0M5L3G7_9LAMI; TCP transcription factor CIN2A
STRINGPOPTR_0001s38480.15e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-53TCP family protein